PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_C1DE13045.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 667aa    MW: 75829.8 Da    PI: 7.6
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_C1DE13045.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.35.1e-1849142290
                   FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek...dgkwevtklele 84 
                             Y+ +Ak++GFs+r+++++ +    +  t+r fvC + g++  +  +   k++r+r+++r+gC+a l++ ++      +w+vt ++++
  Traes_2BL_C1DE13045.1  49 LYSGFAKQCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPAKPFDdGAKQQRNRKSSRCGCQAYLRIGRDAgagGLEWRVTGFSNH 136
                            79************9998877356667999*********998887664678899*****************99877789********* PP

                   FAR1  85 HnHela 90 
                            HnHel 
  Traes_2BL_C1DE13045.1 137 HNHELL 142
                            ****96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1549142IPR004330FAR1 DNA binding domain
PfamPF105512.5E-16265351IPR018289MULE transposase domain
PROSITE profilePS5096610.002541577IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-8548576IPR007527Zinc finger, SWIM-type
SMARTSM005751.0E-6552579IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MERPSSGEEG ERDSPNERRI SLETAAAEAD DSVPYIGQRF PTHEAAYELY SGFAKQCGFS  60
IRRHRTEGKD GVGKGLTRRY FVCHRAGNTP AKPFDDGAKQ QRNRKSSRCG CQAYLRIGRD  120
AGAGGLEWRV TGFSNHHNHE LLRQDEVRFL PAYRVISDSD RDRILVFAKS GISVQQMMRI  180
MELEKCVQPG NLPFTDKDVR NLIHSFRRFD QEDEIVDLLK MCRNVKEKDP NFKYDYTKDA  240
SNCLENIAWS YASSIQSYEV FGDAVVFDTT HRLTSIDMTL GIWIGMNNHG MPCFFSCALL  300
REGNLQSFTW ALQVFLNFMN RKAPQTILTD QNMYLKEAVQ KELPNTKHAL SIGLIALRFP  360
SWFNAVLGRH YNDWENEFYR LNNMESTMDF DLGWSDMVSC YGLHGNRHIA SLFASRKLWA  420
SPYLGGHFSA GLAALPGISK IKDFIQRLLS AQTCLSHFIE QVAVVVDYKD QAGEQQIAQQ  480
SLENTILKTA APVEGHAAAV FTPYAFYKLQ DELVEAAHYA YFHLEGNAFL VRHHTKTDGG  540
CNVTWNQKEE LISCSCQMFE SSGILCRHAL RVLTTLNYFQ IPDHYLPVRW HRTQPQHSKS  600
LIGAPDHGRS YERVKALQSM VSVLVSEAGK SEERMDLATQ EVSVLLSRIR QQPVVANVSG  660
DSVRQQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2487600.0AK248760.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf2n05, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581280.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
RefseqXP_010239957.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLW5BEU90.0W5BEU9_WHEAT; Uncharacterized protein
STRINGMLOC_15705.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151711516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]